Browse FAM109B

Summary
SymbolFAM109B
Namefamily with sequence similarity 109, member B
Aliases DKFZp686J07229; IPIP27B; 27 kDa inositol polyphosphate phosphatase interacting protein B; Sesquipedalian-2
Chromosomal Location22q13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Basic function annotation.
> Subcellular Location, Domain and Function
> Gene Ontology
> KEGG and Reactome Pathway
> Subcellular Location, Domain and Function
 
Subcellular Location Early endosome. Recycling endosome. Golgi apparatus, trans-Golgi network. Cytoplasmic vesicle, clathrin-coated vesicle. Note=Also found on macropinosomes. Not detected in late endosomes, nor in lysosomes.
Domain PF00169 PH domain
Function

Plays a role in endocytic trafficking. Required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane.

> Gene Ontology
 
Biological Process GO:0001881 receptor recycling
GO:0007032 endosome organization
GO:0007033 vacuole organization
GO:0007034 vacuolar transport
GO:0016197 endosomal transport
GO:0016482 cytosolic transport
GO:0042147 retrograde transport, endosome to Golgi
GO:0043112 receptor metabolic process
Molecular Function -
Cellular Component GO:0005769 early endosome
GO:0005802 trans-Golgi network
GO:0030135 coated vesicle
GO:0030136 clathrin-coated vesicle
GO:0031984 organelle subcompartment
GO:0055037 recycling endosome
GO:0098791 Golgi subcompartment
> KEGG and Reactome Pathway
 
KEGG -
Reactome -
Summary
SymbolFAM109B
Namefamily with sequence similarity 109, member B
Aliases DKFZp686J07229; IPIP27B; 27 kDa inositol polyphosphate phosphatase interacting protein B; Sesquipedalian-2
Chromosomal Location22q13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Literatures that report relations between FAM109B and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells.
> Text Mining
 

There is no record.

Summary
SymbolFAM109B
Namefamily with sequence similarity 109, member B
Aliases DKFZp686J07229; IPIP27B; 27 kDa inositol polyphosphate phosphatase interacting protein B; Sesquipedalian-2
Chromosomal Location22q13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets.
> High-throughput Screening
  Statistical results of FAM109B in screening data sets for detecting immune reponses.
PMID Screening System Cancer Type Cell Line Data Set Statistical Results Relation to immunity
29301958CRISPR-Cas9 melanomaB16F10Pmel-1 T cell NA/NSNA/NS
29301958CRISPR-Cas9 melanomaB16F10OT-1 T cell NA/NSNA/NS
28783722CRISPR-Cas9 melanomaMel6242CT-CRISPR NA/NSNA/NS
28723893CRISPR-Cas9 melanomaB16GVAX+Anti-PD1 NA/NSNA/NS
28723893CRISPR-Cas9 melanomaB16GVAX NA/NSNA/NS
25691366RNAiBreast cancerMCF7Luc-CTL assay NA/NSNA/NS
24476824shRNAmelanomaB16Primary screen NA/NSNA/NS
24476824shRNAmelanomaB16Secondary screen NA/NSNA/NS
Summary
SymbolFAM109B
Namefamily with sequence similarity 109, member B
Aliases DKFZp686J07229; IPIP27B; 27 kDa inositol polyphosphate phosphatase interacting protein B; Sesquipedalian-2
Chromosomal Location22q13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets.
> Expression difference between responders and non-responders
> Mutation difference between responders and non-responders
> Expression difference between responders and non-responders
 
Points in the above scatter plot represent the expression difference of FAM109B in various data sets.
No PMID Cancer type Group Drug # Res # NRes Log2 (Fold Change) P value Anno
126997480MelanomaallAnti-PD-1 (pembrolizumab and nivolumab)1412-0.8710.033
226997480MelanomaMAPKiAnti-PD-1 (pembrolizumab and nivolumab)65-1.7580.334
326997480Melanomanon-MAPKiAnti-PD-1 (pembrolizumab and nivolumab)87-0.2130.861
428552987Urothelial cancerallAnti-PD-L1 (atezolizumab) 916-0.3650.384
528552987Urothelial cancersmokingAnti-PD-L1 (atezolizumab) 59-0.3190.803
628552987Urothelial cancernon-smokingAnti-PD-L1 (atezolizumab) 47-0.4240.786
729033130MelanomaallAnti-PD-1 (nivolumab) 2623-0.0510.887
829033130MelanomaNIV3-PROGAnti-PD-1 (nivolumab) 15110.0350.978
929033130MelanomaNIV3-NAIVEAnti-PD-1 (nivolumab) 1112-0.0980.943
1029301960Clear cell renal cell carcinoma (ccRCC)allAnti-PD-1 (nivolumab) 480.3710.74
1129301960Clear cell renal cell carcinoma (ccRCC)VEGFRiAnti-PD-1 (nivolumab) 2001
1229301960Clear cell renal cell carcinoma (ccRCC)non-VEGFRiAnti-PD-1 (nivolumab) 280.8930.565
1329443960Urothelial cancerallAnti-PD-L1 (atezolizumab) 68230-0.3180.0168
> Mutation difference between responders and non-responders
 
Points in the above scatter plot represent the mutation difference of FAM109B in various data sets.
No PMID Cancer type Group Drug # Res # NRes % Mut/Res % Mut/NRes % Diff (R vs NR) Pval Anno
125765070Non-small cell lung cancer (NSCLC)allAnti-PD-1 (pembrolizumab) 14170001
225765070Non-small cell lung cancer (NSCLC)smokingAnti-PD-1 (pembrolizumab) 1030001
325765070Non-small cell lung cancer (NSCLC)non-smokingAnti-PD-1 (pembrolizumab) 4140001
426359337MelanomaallAnti-CTLA-4 (ipilimumab) 27733.71.42.30.469
526359337MelanomaBRAFiAnti-CTLA-4 (ipilimumab) 0140001
626359337Melanomanon-BRAFiAnti-CTLA-4 (ipilimumab) 27593.71.720.532
726997480MelanomaallAnti-PD-1 (pembrolizumab and nivolumab)21174.804.81
826997480MelanomaMAPKiAnti-PD-1 (pembrolizumab and nivolumab)8612.5012.51
926997480Melanomanon-MAPKiAnti-PD-1 (pembrolizumab and nivolumab)13110001
1028552987Urothelial cancerallAnti-PD-L1 (atezolizumab) 9160001
1128552987Urothelial cancersmokingAnti-PD-L1 (atezolizumab) 590001
1228552987Urothelial cancernon-smokingAnti-PD-L1 (atezolizumab) 470001
1329033130MelanomaallAnti-PD-1 (nivolumab) 38272.602.61
1429033130MelanomaNIV3-PROGAnti-PD-1 (nivolumab) 22130001
1529033130MelanomaNIV3-NAIVEAnti-PD-1 (nivolumab) 16146.206.21
1629301960Clear cell renal cell carcinoma (ccRCC)allAnti-PD-1 (nivolumab) 11130001
1729301960Clear cell renal cell carcinoma (ccRCC)VEGFRiAnti-PD-1 (nivolumab) 610001
1829301960Clear cell renal cell carcinoma (ccRCC)non-VEGFRiAnti-PD-1 (nivolumab) 5120001
Summary
SymbolFAM109B
Namefamily with sequence similarity 109, member B
Aliases DKFZp686J07229; IPIP27B; 27 kDa inositol polyphosphate phosphatase interacting protein B; Sesquipedalian-2
Chromosomal Location22q13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of FAM109B. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene.
> Lymphocyte
 
Summary
SymbolFAM109B
Namefamily with sequence similarity 109, member B
Aliases DKFZp686J07229; IPIP27B; 27 kDa inositol polyphosphate phosphatase interacting protein B; Sesquipedalian-2
Chromosomal Location22q13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of FAM109B. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by FAM109B.
> Immunoinhibitor
> Immunostimulator
> MHC molecule
> Immunoinhibitor
 
> Immunostimulator
 
> MHC molecule
 
Summary
SymbolFAM109B
Namefamily with sequence similarity 109, member B
Aliases DKFZp686J07229; IPIP27B; 27 kDa inositol polyphosphate phosphatase interacting protein B; Sesquipedalian-2
Chromosomal Location22q13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of FAM109B. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene.
> Chemokine
> Receptor
> Chemokine
 
> Receptor
 
Summary
SymbolFAM109B
Namefamily with sequence similarity 109, member B
Aliases DKFZp686J07229; IPIP27B; 27 kDa inositol polyphosphate phosphatase interacting protein B; Sesquipedalian-2
Chromosomal Location22q13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Distribution of FAM109B expression across immune and molecular subtypes.
> Immune subtype
> Molecular subtype
> Immune subtype
 
> Molecular subtype
 
Summary
SymbolFAM109B
Namefamily with sequence similarity 109, member B
Aliases DKFZp686J07229; IPIP27B; 27 kDa inositol polyphosphate phosphatase interacting protein B; Sesquipedalian-2
Chromosomal Location22q13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Associations between FAM109B and clinical features.
> Overall survival analysis
> Cancer stage
> Tumor grade
> Overall survival
 
> Stage
 
> Grade
 
Summary
SymbolFAM109B
Namefamily with sequence similarity 109, member B
Aliases DKFZp686J07229; IPIP27B; 27 kDa inositol polyphosphate phosphatase interacting protein B; Sesquipedalian-2
Chromosomal Location22q13.2
External Links HGNC, NCBI, Ensembl, Uniprot, GeneCards
Content Drugs targeting FAM109B collected from DrugBank database.
> Drugs from DrugBank database
 

There is no record.