Summary | |
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Symbol | WDR61 |
Name | WD repeat domain 61 |
Aliases | REC14; SKI8; SKI8 homolog; meiotic recombination REC14 protein homolog; recombination protein REC14; WD repe ...... |
Chromosomal Location | 15q25.1 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Basic function annotation. > Subcellular Location, Domain and Function > Gene Ontology > KEGG and Reactome Pathway |
Subcellular Location | Nucleus Cytoplasm |
Domain |
PF00400 WD domain |
Function |
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of KMT2A/MLL1; it promotes leukemogenesis through association with KMT2A/MLL1-rearranged oncoproteins, such as KMT2A/MLL1-MLLT3/AF9 and KMT2A/MLL1-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3), dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1C. |
Biological Process |
GO:0002683 negative regulation of immune system process GO:0006354 DNA-templated transcription, elongation GO:0006368 transcription elongation from RNA polymerase II promoter GO:0006479 protein methylation GO:0008213 protein alkylation GO:0016055 Wnt signaling pathway GO:0016570 histone modification GO:0016571 histone methylation GO:0018022 peptidyl-lysine methylation GO:0018023 peptidyl-lysine trimethylation GO:0018205 peptidyl-lysine modification GO:0030099 myeloid cell differentiation GO:0031056 regulation of histone modification GO:0031058 positive regulation of histone modification GO:0031060 regulation of histone methylation GO:0031062 positive regulation of histone methylation GO:0032259 methylation GO:0032784 regulation of DNA-templated transcription, elongation GO:0032786 positive regulation of DNA-templated transcription, elongation GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter GO:0034243 regulation of transcription elongation from RNA polymerase II promoter GO:0034729 histone H3-K79 methylation GO:0034968 histone lysine methylation GO:0043414 macromolecule methylation GO:0045637 regulation of myeloid cell differentiation GO:0045638 negative regulation of myeloid cell differentiation GO:0051568 histone H3-K4 methylation GO:0051569 regulation of histone H3-K4 methylation GO:0051571 positive regulation of histone H3-K4 methylation GO:0080182 histone H3-K4 trimethylation GO:0198738 cell-cell signaling by wnt GO:1902275 regulation of chromatin organization GO:1903706 regulation of hemopoiesis GO:1903707 negative regulation of hemopoiesis GO:1905269 positive regulation of chromatin organization GO:2001160 regulation of histone H3-K79 methylation GO:2001162 positive regulation of histone H3-K79 methylation |
Molecular Function | - |
Cellular Component |
GO:0000428 DNA-directed RNA polymerase complex GO:0000785 chromatin GO:0008023 transcription elongation factor complex GO:0016591 DNA-directed RNA polymerase II, holoenzyme GO:0016593 Cdc73/Paf1 complex GO:0030880 RNA polymerase complex GO:0035327 transcriptionally active chromatin GO:0055029 nuclear DNA-directed RNA polymerase complex GO:0055087 Ski complex GO:0061695 transferase complex, transferring phosphorus-containing groups |
KEGG |
hsa03018 RNA degradation |
Reactome |
R-HSA-429914: Deadenylation-dependent mRNA decay R-HSA-8866654: E3 ubiquitin ligases ubiquitinate target proteins R-HSA-112387: Elongation arrest and recovery R-HSA-112382: Formation of RNA Pol II elongation complex R-HSA-74160: Gene Expression R-HSA-392499: Metabolism of proteins R-HSA-597592: Post-translational protein modification R-HSA-8852135: Protein ubiquitination R-HSA-674695: RNA Polymerase II Pre-transcription Events R-HSA-73857: RNA Polymerase II Transcription R-HSA-75955: RNA Polymerase II Transcription Elongation R-HSA-429958: mRNA decay by 3' to 5' exoribonuclease |
Summary | |
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Symbol | WDR61 |
Name | WD repeat domain 61 |
Aliases | REC14; SKI8; SKI8 homolog; meiotic recombination REC14 protein homolog; recombination protein REC14; WD repe ...... |
Chromosomal Location | 15q25.1 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content | Literatures that report relations between WDR61 and anti-tumor immunity. The specific mechanism were also collected if the literature reports that a gene specifically promotes or inhibits the infiltration or function of T/NK cells. |
There is no record. |
Summary | |
---|---|
Symbol | WDR61 |
Name | WD repeat domain 61 |
Aliases | REC14; SKI8; SKI8 homolog; meiotic recombination REC14 protein homolog; recombination protein REC14; WD repe ...... |
Chromosomal Location | 15q25.1 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content | High-throughput screening data (e.g. CRISPR-Cas9, shRNA and RNAi) for T cell-mediated killing. Genetic screen techniques can identify mechanisms of tumor cell resistance (e.g., PTPN2) and sensitivity (e.g., APLNR) to killing by cytotoxic T cells, the central effectors of anti-tumor immunity. After comprehensively searching, eight groups of screening data sets were collected in the current database. In this tab, users can check whether their selected genes cause resistance or increase sensitivity to T cell-mediated killing in various data sets. |
> High-throughput Screening
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Statistical results of WDR61 in screening data sets for detecting immune reponses.
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Summary | |
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Symbol | WDR61 |
Name | WD repeat domain 61 |
Aliases | REC14; SKI8; SKI8 homolog; meiotic recombination REC14 protein homolog; recombination protein REC14; WD repe ...... |
Chromosomal Location | 15q25.1 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Transcriptomic and genomic profiling of pre-treated tumor biopsies from responders and non-responders to immunotherapy. These data were used to identify signatures and mechanisms of response to checkpoint blockade (e.g., anti-PDL1 and anti-PD1). One example is that mutations in the gene PBRM1 benefit clinical survival of patients with clear cell renal cell carcinoma. After comprehensively searching, we collected 5 and 6 of transcriptomic and genomic data sets, respectively. In this tab, users can check whether their selected genes have significant difference of expression or mutation between responders and non-responders in various data sets. > Expression difference between responders and non-responders > Mutation difference between responders and non-responders |
Points in the above scatter plot represent the expression difference of WDR61 in various data sets.
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Points in the above scatter plot represent the mutation difference of WDR61 in various data sets.
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Summary | |
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Symbol | WDR61 |
Name | WD repeat domain 61 |
Aliases | REC14; SKI8; SKI8 homolog; meiotic recombination REC14 protein homolog; recombination protein REC14; WD repe ...... |
Chromosomal Location | 15q25.1 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Relations between abundance of tumor-infiltrating lymphocytes (TILs) and expression, copy number, methylation, or mutation of WDR61. The immune-related signatures of 28 TIL types from Charoentong's study, which can be viewed in the download page. For each cancer type, the relative abundance of TILs were inferred by using gene set variation analysis (GSVA) based on gene expression profile. In this tab, users can examine which kinds of TILs might be regulated by the current gene. |
Summary | |
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Symbol | WDR61 |
Name | WD repeat domain 61 |
Aliases | REC14; SKI8; SKI8 homolog; meiotic recombination REC14 protein homolog; recombination protein REC14; WD repe ...... |
Chromosomal Location | 15q25.1 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Relations between three kinds of immunomodulators and expression, copy number, methylation, or mutation of WDR61. These immunomo-dulators were collected from Charoentong's study. In this tab, users can examine which immunomodulators might be regulated by WDR61. > Immunoinhibitor > Immunostimulator > MHC molecule |
Summary | |
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Symbol | WDR61 |
Name | WD repeat domain 61 |
Aliases | REC14; SKI8; SKI8 homolog; meiotic recombination REC14 protein homolog; recombination protein REC14; WD repe ...... |
Chromosomal Location | 15q25.1 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Relations between chemokines (or receptors) and expression, copy number, methylation, or mutation of WDR61. In this tab, users can examine which chemokines (or receptors) might be regulated by the current gene. > Chemokine > Receptor |
Summary | |
---|---|
Symbol | WDR61 |
Name | WD repeat domain 61 |
Aliases | REC14; SKI8; SKI8 homolog; meiotic recombination REC14 protein homolog; recombination protein REC14; WD repe ...... |
Chromosomal Location | 15q25.1 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Distribution of WDR61 expression across immune and molecular subtypes. > Immune subtype > Molecular subtype |
Summary | |
---|---|
Symbol | WDR61 |
Name | WD repeat domain 61 |
Aliases | REC14; SKI8; SKI8 homolog; meiotic recombination REC14 protein homolog; recombination protein REC14; WD repe ...... |
Chromosomal Location | 15q25.1 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content |
Associations between WDR61 and clinical features. > Overall survival analysis > Cancer stage > Tumor grade |
Summary | |
---|---|
Symbol | WDR61 |
Name | WD repeat domain 61 |
Aliases | REC14; SKI8; SKI8 homolog; meiotic recombination REC14 protein homolog; recombination protein REC14; WD repe ...... |
Chromosomal Location | 15q25.1 |
External Links | HGNC, NCBI, Ensembl, Uniprot, GeneCards |
Content | Drugs targeting WDR61 collected from DrugBank database. |
There is no record. |